xcp_d.utils.confounds.load_confound_matrix

xcp_d.utils.confounds.load_confound_matrix(params, img_file, confounds_file, confounds_json_file, custom_confounds=None)[source]

Load a subset of the confounds associated with a given file.

Parameters:

  • params ({“36P”, “24P”, “27P”, “acompcor”, “acompcor_gsr”, “aroma”, “aroma_gsr”, “custom”}, optional) – Shorthand for the parameter set to extract from the confounds TSV. Default is “36P”, most expansive option.

  • img_file (str) – The path to the bold file. Used to load the AROMA mixing matrix, if necessary.

  • confounds_file (str) – The fMRIPrep confounds file. Used to load most confounds.

  • confounds_json_file (str) – The JSON file associated with the fMRIPrep confounds file.

  • custom_confounds (str or None, optional) – Custom confounds TSV if there is one. Default is None.

Returns:

confounds_df – The loaded and selected confounds. If “AROMA” is requested, then this DataFrame will include signal components as well. These will be named something like “signal_[XX]”.

Return type:

pandas.DataFrame