xcp_d.workflows.execsummary.init_execsummary_functional_plots_wf

xcp_d.workflows.execsummary.init_execsummary_functional_plots_wf(preproc_nifti, t1w_available, t2w_available, output_dir, layout, name='execsummary_functional_plots_wf')[source]

Generate the functional figures for an executive summary.

Workflow Graph

(Source code)

Parameters:

  • preproc_nifti (str or None) – BOLD data before post-processing. A NIFTI file, not a CIFTI.

  • t1w_available (bool) – Generally True.

  • t2w_available (bool) – Generally False.

  • output_dir (str) – Path to the output directory for xcp_d derivatives. This should not include the xcp_d folder. For example, “/path/to/dset/derivatives/”.

  • layout (bids.layout.BIDSLayout) – BIDSLayout indexing the ingested (e.g., fMRIPrep-format) derivatives.

  • name (str, optional) – Name of the workflow. This is used for working directories and workflow graphs.

Inputs:

  • preproc_nifti – BOLD data before post-processing. A NIFTI file, not a CIFTI. Set from the parameter.

  • boldref (str) – Path to the BOLD reference file associated with the target BOLD run. This comes from the preprocessing derivatives.

  • t1w – T1w image in a standard space, taken from the output of init_postprocess_anat_wf.

  • t2w – T2w image in a standard space, taken from the output of init_postprocess_anat_wf.