xcp_d.workflows.anatomical.plotting module

Workflows for generating plots from anatomical data.

xcp_d.workflows.anatomical.plotting.init_brainsprite_figures_wf(t1w_available, t2w_available, name='brainsprite_figures_wf')

Create mosaic and PNG files for executive summary brainsprite.

Workflow Graph

(Source code, png, svg, pdf)

Parameters:

• t1w_available (bool) – True if a T1w image is available.

• t2w_available (bool) – True if a T2w image is available.

• name (str, optional) – Name of the workflow. This is used for working directories and workflow graphs. Default is “init_brainsprite_figures_wf”.

Inputs:

• t1w – Path to T1w image. Optional. Should only be defined if t1w_available is True.

• t2w – Path to T2w image. Optional. Should only be defined if t2w_available is True.

• lh_wm_surf

• rh_wm_surf

• lh_pial_surf

• rh_pial_surf

xcp_d.workflows.anatomical.plotting.init_execsummary_anatomical_plots_wf(t1w_available, t2w_available, name='execsummary_anatomical_plots_wf')

Generate the anatomical figures for an executive summary.

Workflow Graph

(Source code, png, svg, pdf)

Parameters:

• t1w_available (bool) – Generally True.

• t2w_available (bool) – Generally False.

• name (str, optional) – Name of the workflow. This is used for working directories and workflow graphs.

Inputs:

• t1w – T1w image, after warping to standard space.

• t2w – T2w image, after warping to standard space.

• template